Transcript: lnc-SMIM23-3:1

Basic information

LNCipedia transcript ID: lnc-SMIM23-3:1 
LNCipedia gene ID: lnc-SMIM23-3
Ensembl Gene ID: ENSG00000253110
Ensembl Transcript ID: ENST00000524175
Location (hg38): chr5:171773652-171774739
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 705 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524175.1
Alternative gene names: ENSG00000253110.1; CTB-78H18.1; AC011410.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -175.041 non-coding 
CPAT coding probability 39.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM23-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTB-78H18.1.1-3:1
4.1 lnc-CTB-78H18.1.1-3:1
5.0 lnc-CTB-78H18.1.1-3:1
5.1 lnc-ATP6V0E1-43:1
5.2 lnc-SMIM23-3:1