Transcript: lnc-SMIM32-4:7

Basic information

LNCipedia transcript ID: lnc-SMIM32-4:7 
LNCipedia gene ID: lnc-SMIM32-4
Location (hg38): chr5:136191468-136193134
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1667 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000607574.1
Alternative gene names: ENSG00000271824.1; AC009014.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 735.7949 coding 
CPAT coding probability 96.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM32-4:7 no no no no

Available literature

  1. Yu (2012), LncRNAs expression signatures of renal clear cell carcinoma revealed by microarray., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPC7-4:2
4.0 lnc-TRPC7-4:2
4.1 lnc-TRPC7-4:2
5.0 lnc-TRPC7-4:2
5.1 lnc-TIFAB-21:7
5.2 lnc-SMIM32-4:7