Transcript: lnc-SMIM36-5:1

Basic information

LNCipedia transcript ID: lnc-SMIM36-5:1 
LNCipedia gene ID: lnc-SMIM36-5
Location (hg38): chr17:55526964-55561091
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000455347; NONHSAT054815
Alternative gene names: ENSG00000236319; AC007638.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -205.4459 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM36-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMD-4:1
3.1 lnc-MMD-5:1
4.0 lnc-MMD-5:1
4.1 lnc-MMD-5:1
5.0 lnc-MMD-5:1
5.1 lnc-PTRH2-65:1
5.2 lnc-SMIM36-5:1