Transcript: lnc-SMIM37-1:2

Basic information

LNCipedia transcript ID: lnc-SMIM37-1:2 
LNCipedia gene ID: lnc-SMIM37-1
Location (hg38): chr2:110211529-110222940
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1620 bp
Exons: 8
Sources: Broad Institute
Alternative transcript names: TCONS_00003368
Alternative gene names: XLOC_002263; linc-NPHP1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 562.7176 coding 
CPAT coding probability 79.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMIM37-1:2 no no no no

Available literature

  1. Crappé (2013), Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs., BMC Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPHP1-1:2
3.1 lnc-NPHP1-1:2
4.0 lnc-NPHP1-1:2
4.1 lnc-NPHP1-1:2
5.0 lnc-NPHP1-1:2
5.1 lnc-EN1-92:2
5.2 lnc-SMIM37-1:2