Transcript: lnc-SMNDC1-2:1

Basic information

LNCipedia transcript ID: lnc-SMNDC1-2:1 
LNCipedia gene ID: lnc-SMNDC1-2
Location (hg38): chr10:110428840-110496196
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000445730.1; RP11-525A16.1-001; OTTHUMT00000050330.1; NONHSAT016342
Alternative gene names: ENSG00000235874.1; RP11-525A16.1; OTTHUMG00000019037.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -115.8379 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMNDC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMNDC1-2:1
4.0 lnc-SMNDC1-2:1
4.1 lnc-SMNDC1-2:1
5.0 lnc-SMNDC1-2:1
5.1 lnc-BBIP1-12:10
5.2 lnc-SMNDC1-2:1