Transcript: lnc-SMOC2-12:1

Basic information

LNCipedia transcript ID: lnc-SMOC2-12:1 
LNCipedia gene ID: lnc-SMOC2-12
Location (hg38): chr6:168955288-168957008
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1126 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3329_chr6:169355382-169357103_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.7311 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMOC2-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMOC2-12:1
4.0 lnc-SMOC2-12:1
4.1 lnc-SMOC2-12:1
5.0 lnc-SMOC2-12:1
5.1 lnc-SYTL3-110:1
5.2 lnc-SMOC2-12:1