Transcript: lnc-SMOC2-7:2

Basic information

LNCipedia transcript ID: lnc-SMOC2-7:2 
LNCipedia gene ID: lnc-SMOC2-7
Ensembl Gene ID: ENSG00000234519
Ensembl Transcript ID: ENST00000435377
Location (hg38): chr6:169067899-169069424
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 304 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011421; ENST00000435377; ENST00000435377.1; RP3-495K2.1-002; OTTHUMT00000043207.1; NONHSAT116177
Alternative gene names: XLOC_005551; linc-C6orf120-4; ENSG00000234519; RP3-495K2.1; ENSG00000234519.1; OTTHUMG00000016051.1; AL109924.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9141 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMOC2-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMOC2-6:2
3.1 lnc-SMOC2-7:2
4.0 lnc-SMOC2-7:2
4.1 lnc-SMOC2-7:2
5.0 lnc-SMOC2-7:2
5.1 lnc-SYTL3-113:3
5.2 lnc-SMOC2-7:2