Transcript: lnc-SMPD1-2:1

Basic information

LNCipedia transcript ID: lnc-SMPD1-2:1 
LNCipedia gene ID: lnc-SMPD1-2
Ensembl Gene ID: ENSG00000254443
Ensembl Transcript ID: ENST00000532430
Location (hg38): chr11:6362799-6365262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1288 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532430; ENST00000532430.1; RP11-304C12.3-002; OTTHUMT00000387042.1; NONHSAT017710
Alternative gene names: ENSG00000254443; RP11-304C12.3; ENSG00000254443.1; OTTHUMG00000165915.1; AC068733.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.3212 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMPD1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SMPD1-2:1
3.1 lnc-SMPD1-2:1
4.0 lnc-SMPD1-2:1
4.1 lnc-SMPD1-2:1
5.0 lnc-SMPD1-2:1
5.1 lnc-OR51M1-13:1
5.2 lnc-SMPD1-2:1