Transcript: lnc-SMPD1-3:3

Basic information

LNCipedia transcript ID: lnc-SMPD1-3:3 
LNCipedia gene ID: lnc-SMPD1-3
Ensembl Gene ID: ENSG00000282556
Ensembl Transcript ID: ENST00000632757
Location (hg38): chr11:6323554-6324023
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 269 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000632757.1
Alternative gene names: ENSG00000282556.1; RP11-304C12.5; AC068733.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.8155 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMPD1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SMPD1-3:3
4.1 lnc-SMPD1-3:3
5.0 lnc-SMPD1-3:3
5.1 lnc-OR51M1-12:1
5.2 lnc-SMPD1-3:3