Transcript: lnc-SMPD3-2:1

Basic information

LNCipedia transcript ID: lnc-SMPD3-2:1 
LNCipedia gene ID: lnc-SMPD3-2
Location (hg38): chr16:68645380-68646168
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 550 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562172.1; RP11-615I2.2-001; OTTHUMT00000433757.1
Alternative gene names: ENSG00000260577.1; RP11-615I2.2; OTTHUMG00000176785.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 88.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SMPD3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMPD3-2:1
4.0 lnc-SMPD3-2:1
4.1 lnc-SMPD3-2:1
5.0 lnc-SMPD3-2:1
5.1 lnc-SLC12A4-13:4
5.2 lnc-SMPD3-2:1