Transcript: lnc-SMUG1-9:2

Basic information

LNCipedia transcript ID: lnc-SMUG1-9:2 
LNCipedia gene ID: lnc-SMUG1-9
RefSeq ID: NR_026658
Location (hg38): chr12:54078839-54081823
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 905 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT028569; NR_026658; NR_026658.1
Alternative gene names: LOC100240735


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.5769 non-coding 
CPAT coding probability 13.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMUG1-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-9:2
4.0 lnc-SMUG1-9:2
4.1 lnc-SMUG1-9:2
5.0 lnc-SMUG1-9:2
5.1 lnc-PPP1R1A-16:2
5.2 lnc-SMUG1-9:2