Transcript: lnc-SMYD3-2:1

Basic information

LNCipedia transcript ID: lnc-SMYD3-2:1 
LNCipedia gene ID: lnc-SMYD3-2
Ensembl Gene ID: ENSG00000231612
Ensembl Transcript ID: ENST00000414565
Location (hg38): chr1:245673732-245676478
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414565.1; RP11-522M21.3-001; OTTHUMT00000096663.1; NONHSAT010689
Alternative gene names: ENSG00000231612.1; RP11-522M21.3; OTTHUMG00000040081.1; AC104462.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.7061 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMYD3-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMYD3-2:1
4.0 lnc-SMYD3-2:1
4.1 lnc-SMYD3-2:1
5.0 lnc-SMYD3-2:1
5.1 lnc-LYPD8-35:1
5.2 lnc-SMYD3-2:1