Transcript: lnc-SNAP25-1:1

Basic information

LNCipedia transcript ID: lnc-SNAP25-1:1 
LNCipedia gene ID: lnc-SNAP25-1
Ensembl Gene ID: ENSG00000232448
Ensembl Transcript ID: ENST00000458004
Location (hg38): chr20:10180235-10185775
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027901; ENST00000458004; ENST00000458004.1; RP11-416N4.1-001; OTTHUMT00000077972.1; NONHSAT078585
Alternative gene names: XLOC_013459; linc-SNAP25-2; ENSG00000232448; RP11-416N4.1; ENSG00000232448.1; OTTHUMG00000031861.1; AL354824.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.8444 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAP25-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNAP25-1:1
3.1 lnc-SNAP25-1:1
4.0 lnc-SNAP25-1:1
4.1 lnc-SNAP25-1:1
5.0 lnc-SNAP25-1:1
5.1 lnc-SLX4IP-8:10
5.2 lnc-SNAP25-1:1