Transcript: lnc-SNAP25-1:10

Basic information

LNCipedia transcript ID: lnc-SNAP25-1:10 
LNCipedia gene ID: lnc-SNAP25-1
Location (hg38): chr20:10172578-10197179
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 761 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230506.1|FTMT27900017155.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -64.3169 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAP25-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNAP25-1:10
5.0 lnc-SNAP25-1:10
5.1 lnc-SLX4IP-8:7
5.2 lnc-SNAP25-1:10