Transcript: lnc-SNAP25-1:7

Basic information

LNCipedia transcript ID: lnc-SNAP25-1:7 
LNCipedia gene ID: lnc-SNAP25-1
Location (hg38): chr20:10172429-10207370
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230506.1|ENCT00000258958.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.5344 non-coding 
CPAT coding probability 5.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAP25-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNAP25-1:7
5.0 lnc-SNAP25-1:7
5.1 lnc-SLX4IP-8:3
5.2 lnc-SNAP25-1:7