Transcript: lnc-SNAPC2-2:3

Basic information

LNCipedia transcript ID: lnc-SNAPC2-2:3 
LNCipedia gene ID: lnc-SNAPC2-2
Ensembl Gene ID: ENSG00000269139
Ensembl Transcript ID: ENST00000620586
Location (hg38): chr19:7926223-7926810
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 588 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620586.1
Alternative gene names: ENSG00000269139.2; CTD-3193O13.8; AC010336.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -283.4792 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAPC2-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-3193O13.2.1-2:2
4.1 lnc-CTD-3193O13.2.1-2:2
5.0 lnc-CTD-3193O13.2.1-2:2
5.1 lnc-CCL25-9:4
5.2 lnc-SNAPC2-2:3