Transcript: lnc-SNAPC3-11:1

Basic information

LNCipedia transcript ID: lnc-SNAPC3-11:1 
LNCipedia gene ID: lnc-SNAPC3-11
Location (hg38): chr9:14314232-14359244
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4605 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225472.1|ENCT00000444091.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 2.6771 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNAPC3-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C9orf146-2:8
5.0 lnc-C9orf146-2:8
5.1 lnc-RECK-201:4
5.2 lnc-SNAPC3-11:1