Transcript: lnc-SNAPC5-1:1

Basic information

LNCipedia transcript ID: lnc-SNAPC5-1:1 
LNCipedia gene ID: lnc-SNAPC5-1
Location (hg38): chr15:66489748-66492109
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1078 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565387.1; CTD-3185P2.1-001; OTTHUMT00000420724.1; NONHSAT046790
Alternative gene names: ENSG00000261351.1; CTD-3185P2.1; OTTHUMG00000172828.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 229.699 coding 
CPAT coding probability 18.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNAPC5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNAPC5-1:1
4.0 lnc-SNAPC5-1:1
4.1 lnc-SNAPC5-1:1
5.0 lnc-SNAPC5-1:1
5.1 lnc-TIPIN-6:1
5.2 lnc-SNAPC5-1:1