Transcript: lnc-SNAPC5-1:2

Basic information

LNCipedia transcript ID: lnc-SNAPC5-1:2 
LNCipedia gene ID: lnc-SNAPC5-1
Ensembl Gene ID: ENSG00000261351
Ensembl Transcript ID: ENST00000565387
Location (hg38): chr15:66488658-66492109
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2168 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565387.2
Alternative gene names: ENSG00000261351.2; CTD-3185P2.1; AC116913.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 229.699 coding 
CPAT coding probability 17.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNAPC5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SNAPC5-1:2
4.1 lnc-SNAPC5-1:2
5.0 lnc-SNAPC5-1:2
5.1 lnc-TIPIN-6:2
5.2 lnc-SNAPC5-1:2