Transcript: lnc-SNCA-5:1

Basic information

LNCipedia transcript ID: lnc-SNCA-5:1 
LNCipedia gene ID: lnc-SNCA-5
Ensembl Gene ID: ENSG00000249049
Ensembl Transcript ID: ENST00000502368
Location (hg38): chr4:91319034-91325306
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 375 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502368.1
Alternative gene names: ENSG00000249049.1; RP11-763F8.1; AC074124.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -560.4241 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNCA-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-763F8.1.1-3:1
4.1 lnc-RP11-763F8.1.1-3:1
5.0 lnc-RP11-763F8.1.1-3:1
5.1 lnc-GPRIN3-8:1
5.2 lnc-SNCA-5:1