Transcript: lnc-SNCB-1:1

Basic information

LNCipedia transcript ID: lnc-SNCB-1:1 
LNCipedia gene ID: lnc-SNCB-1
Ensembl Gene ID: ENSG00000248484
Ensembl Transcript ID: ENST00000507236
Location (hg38): chr5:176707356-176726243
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009815; ENST00000507236; ENST00000507236.1; RP11-375B1.1-001; OTTHUMT00000372160.1
Alternative gene names: XLOC_005093; linc-SNCB-2; ENSG00000248484; RP11-375B1.1; ENSG00000248484.1; OTTHUMG00000163224.1; AC113391.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.1864 non-coding 
CPAT coding probability 15.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNCB-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNCB-1:1
3.1 lnc-SNCB-1:1
4.0 lnc-SNCB-1:1
4.1 lnc-SNCB-1:1
5.0 lnc-SNCB-1:1
5.1 lnc-PDLIM7-35:1
5.2 lnc-SNCB-1:1