Transcript: lnc-SNRNP200-1:1

Basic information

LNCipedia transcript ID: lnc-SNRNP200-1:1 
LNCipedia gene ID: lnc-SNRNP200-1
Ensembl Gene ID: ENSG00000230747
Ensembl Transcript ID: ENST00000421534
Location (hg38): chr2:96307263-96321731
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 740 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421534.1; AC021188.4-001; OTTHUMT00000338887.1; NONHSAT072563
Alternative gene names: ENSG00000230747.1; AC021188.4; OTTHUMG00000155228.1; AC021188.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.7289 non-coding 
CPAT coding probability 10.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRNP200-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNRNP200-1:1
4.0 lnc-SNRNP200-1:1
4.1 lnc-SNRNP200-1:1
5.0 lnc-SNRNP200-1:1
5.1 lnc-ZNF514-49:3
5.2 lnc-SNRNP200-1:1