Transcript: lnc-SNRPC-2:2

Basic information

LNCipedia transcript ID: lnc-SNRPC-2:2 
LNCipedia gene ID: lnc-SNRPC-2
Ensembl Gene ID: ENSG00000272288
Ensembl Transcript ID: ENST00000606496
Location (hg38): chr6:34696945-34697470
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 365 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606496.1
Alternative gene names: ENSG00000272288.1; RP11-140K17.3; ENSG00000272288.5; AL451165.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -529.1821 non-coding 
CPAT coding probability 14.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPC-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNRPC-2:2
4.0 lnc-SNRPC-2:2
4.1 lnc-SNRPC-2:2
5.0 lnc-SNRPC-2:2
5.1 lnc-PI16-64:8
5.2 lnc-SNRPC-2:2