Transcript: lnc-SNRPD1-1:1

Basic information

LNCipedia transcript ID: lnc-SNRPD1-1:1 
LNCipedia gene ID: lnc-SNRPD1-1
Location (hg38): chr18:21630138-21633524
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 745 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000577906.1; RP11-13N13.2-001; OTTHUMT00000444023.1; NONHSAT058578
Alternative gene names: ENSG00000263350.1; RP11-13N13.2; OTTHUMG00000178935.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.5506 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPD1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNRPD1-1:1
4.0 lnc-SNRPD1-1:1
4.1 lnc-SNRPD1-1:1
5.0 lnc-SNRPD1-1:1
5.1 lnc-RIOK3-51:1
5.2 lnc-SNRPD1-1:1