Transcript: lnc-SNX10-2:3

Basic information

LNCipedia transcript ID: lnc-SNX10-2:3 
LNCipedia gene ID: lnc-SNX10-2
Ensembl Gene ID: ENSG00000214870
Ensembl Transcript ID: ENST00000421862
Location (hg38): chr7:26398601-26494144
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 907 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421862; ENST00000421862.1; AC004540.5-004; OTTHUMT00000328007.2; NONHSAT119633
Alternative gene names: ENSG00000214870; AC004540.5; ENSG00000214870.4; OTTHUMG00000152806.2; ENSG00000214870.8; AC004540.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -107.9435 non-coding 
CPAT coding probability 13.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNX10-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX10-2:2
3.1 lnc-SNX10-2:3
4.0 lnc-SNX10-2:3
4.1 lnc-SNX10-2:3
5.0 lnc-SNX10-2:3
5.1 lnc-SNX10-10:3
5.2 lnc-SNX10-2:3