Transcript: lnc-SNX10-2:6

Basic information

LNCipedia transcript ID: lnc-SNX10-2:6 
LNCipedia gene ID: lnc-SNX10-2
Location (hg38): chr7:26398731-26498974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3202 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418758; ENST00000418758.2; AC004540.5-201; NONHSAT119636
Alternative gene names: ENSG00000214870; AC004540.5; ENSG00000214870.4; OTTHUMG00000152806.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -10.3134 non-coding 
CPAT coding probability 13.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNX10-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX10-2:6
3.1 lnc-SNX10-2:6
4.0 lnc-SNX10-2:6
4.1 lnc-SNX10-2:6
5.0 lnc-SNX10-2:6
5.1 lnc-SNX10-10:16
5.2 lnc-SNX10-2:6