Transcript: lnc-SNX10-7:2

Basic information

LNCipedia transcript ID: lnc-SNX10-7:2 
LNCipedia gene ID: lnc-SNX10-7
Ensembl Gene ID: ENSG00000222004
Ensembl Transcript ID: ENST00000409974
Location (hg38): chr7:26637871-26647270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1956 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409974.7
Alternative gene names: ENSG00000222004.7; C7orf71


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -62.6756 non-coding 
CPAT coding probability 64.65% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SNX10-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C7orf71-7:1
4.1 lnc-C7orf71-7:1
5.0 lnc-C7orf71-7:1
5.1 lnc-SNX10-15:1
5.2 lnc-SNX10-7:2