Transcript: lnc-SNX11-2:1

Basic information

LNCipedia transcript ID: lnc-SNX11-2:1 
LNCipedia gene ID: lnc-SNX11-2
Location (hg38): chr17:48294345-48307829
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 670 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421610.1; AC090627.1-001; OTTHUMT00000255118.1; NONHSAT054392
Alternative gene names: ENSG00000235300.2; AC090627.1; OTTHUMG00000132087.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6131 non-coding 
CPAT coding probability 2.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX11-2:1
4.0 lnc-SNX11-2:1
4.1 lnc-SNX11-2:1
5.0 lnc-SNX11-2:1
5.1 lnc-ACSF2-61:2
5.2 lnc-SNX11-2:1