Transcript: lnc-SNX11-2:4

Basic information

LNCipedia transcript ID: lnc-SNX11-2:4 
LNCipedia gene ID: lnc-SNX11-2
Ensembl Gene ID: ENSG00000235300
Ensembl Transcript ID: ENST00000604191
Location (hg38): chr17:48294375-48307700
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 571 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054393; ENST00000604191.1
Alternative gene names: ENSG00000235300.3; AC090627.1; ENSG00000235300.4; THRA1/BTR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6131 non-coding 
CPAT coding probability 4.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX11-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX11-2:4
4.0 lnc-SNX11-2:4
4.1 lnc-SNX11-2:4
5.0 lnc-SNX11-2:4
5.1 lnc-ACSF2-61:5
5.2 lnc-SNX11-2:4