Transcript: lnc-SNX11-2:6

Basic information

LNCipedia transcript ID: lnc-SNX11-2:6 
LNCipedia gene ID: lnc-SNX11-2
RefSeq ID: NR_131239
Location (hg38): chr17:48294347-48307829
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 728 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131239.1
Alternative gene names: THRA1/BTR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.6131 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX11-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-ACSF2-61:4
5.1 lnc-ACSF2-61:4
5.2 lnc-SNX11-2:6