Transcript: lnc-SNX13-2:1

Basic information

LNCipedia transcript ID: lnc-SNX13-2:1 
LNCipedia gene ID: lnc-SNX13-2
Ensembl Gene ID: ENSG00000236039
Ensembl Transcript ID: ENST00000439046
Location (hg38): chr7:17434477-17460672
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439046; ENST00000439046.1; AC019117.2-001; OTTHUMT00000327603.1; NONHSAT119336
Alternative gene names: ENSG00000236039; AC019117.2; ENSG00000236039.1; OTTHUMG00000152727.1; ENSG00000236039.2; AC017060.1; AC019117.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3029 non-coding 
CPAT coding probability 4.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX13-2:1 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX13-2:1
3.1 lnc-SNX13-2:1
4.0 lnc-SNX13-2:1
4.1 lnc-SNX13-2:1
5.0 lnc-SNX13-2:1
5.1 lnc-SNX13-6:9
5.2 lnc-SNX13-2:1