Transcript: lnc-SNX13-2:11

Basic information

LNCipedia transcript ID: lnc-SNX13-2:11 
LNCipedia gene ID: lnc-SNX13-2
Location (hg38): chr7:17463246-17524596
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 721 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226598.1|FTMT22500047564.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.7538 non-coding 
CPAT coding probability 6.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX13-2:11 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNX13-2:11
5.0 lnc-SNX13-2:11
5.1 lnc-SNX13-6:4
5.2 lnc-SNX13-2:11