Transcript: lnc-SNX13-2:12

Basic information

LNCipedia transcript ID: lnc-SNX13-2:12 
LNCipedia gene ID: lnc-SNX13-2
Ensembl Gene ID: ENSG00000236039
Ensembl Transcript ID: ENST00000636929
Location (hg38): chr7:17405479-17524175
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1462 bp
Exons: 11
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636929.1
Alternative gene names: ENSG00000236039.2; AC017060.1; AC019117.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.7637 non-coding 
CPAT coding probability 2.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX13-2:12 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNX13-2:12
5.0 lnc-SNX13-2:12
5.1 lnc-SNX13-6:6
5.2 lnc-SNX13-2:12