Transcript: lnc-SNX13-2:3

Basic information

LNCipedia transcript ID: lnc-SNX13-2:3 
LNCipedia gene ID: lnc-SNX13-2
Location (hg38): chr7:17457270-17463329
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 624 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT119339
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.7637 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX13-2:3 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX13-2:3
4.0 lnc-SNX13-2:3
4.1 lnc-SNX13-2:3
5.0 lnc-SNX13-2:3
5.1 lnc-SNX13-6:8
5.2 lnc-SNX13-2:3