Transcript: lnc-SNX13-2:5

Basic information

LNCipedia transcript ID: lnc-SNX13-2:5 
LNCipedia gene ID: lnc-SNX13-2
Location (hg38): chr7:17433252-17457124
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2978 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT119335
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4462 non-coding 
CPAT coding probability 13.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX13-2:5 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX13-2:5
4.0 lnc-SNX13-2:5
4.1 lnc-SNX13-2:5
5.0 lnc-SNX13-2:5
5.1 lnc-SNX13-6:11
5.2 lnc-SNX13-2:5