Transcript: lnc-SNX16-2:2

Basic information

LNCipedia transcript ID: lnc-SNX16-2:2 
LNCipedia gene ID: lnc-SNX16-2
Ensembl Gene ID: ENSG00000253503
Ensembl Transcript ID: ENST00000518367
Location (hg38): chr8:82523336-82536407
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 257 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518367; ENST00000518367.1; RP11-653B10.1-002; OTTHUMT00000380600.1; NONHSAT127488
Alternative gene names: ENSG00000253503; RP11-653B10.1; ENSG00000253503.1; OTTHUMG00000164855.1; ENSG00000253503.5; AC060765.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7521 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX16-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SNX16-2:2
3.1 lnc-SNX16-2:2
4.0 lnc-SNX16-2:2
4.1 lnc-SNX16-2:2
5.0 lnc-SNX16-2:2
5.1 lnc-CPA6-167:4
5.2 lnc-SNX16-2:2