Transcript: lnc-SNX19-9:1

Basic information

LNCipedia transcript ID: lnc-SNX19-9:1 
LNCipedia gene ID: lnc-SNX19-9
Ensembl Gene ID: ENSG00000237654
Ensembl Transcript ID: ENST00000414466
RefSeq ID: NR_110140
Location (hg38): chr11:131533857-131540867
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4335 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000414466.1; AP003025.2-001; OTTHUMT00000142053.1; NONHSAT025174; NR_110140; ENST00000414466.5; NR_110140.1
Alternative gene names: ENSG00000237654.1; AP003025.2; OTTHUMG00000066440.1; ENSG00000237654.5; LOC101929653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2874 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX19-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf39-2:1
4.0 lnc-C11orf39-2:1
4.1 lnc-C11orf39-2:1
5.0 lnc-C11orf39-2:1
5.1 lnc-OPCML-2:1
5.2 lnc-SNX19-9:1