Transcript: lnc-SNX19-9:4

Basic information

LNCipedia transcript ID: lnc-SNX19-9:4 
LNCipedia gene ID: lnc-SNX19-9
Ensembl Gene ID: ENSG00000237654
Ensembl Transcript ID: ENST00000443319
Location (hg38): chr11:131502759-131540616
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 432 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443319.1; AP003025.2-002; OTTHUMT00000142054.1
Alternative gene names: ENSG00000237654.1; AP003025.2; OTTHUMG00000066440.1; ENSG00000237654.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.3487 non-coding 
CPAT coding probability 27.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX19-9:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf39-2:2
4.0 lnc-C11orf39-2:2
4.1 lnc-C11orf39-2:2
5.0 lnc-C11orf39-2:2
5.1 lnc-OPCML-2:4
5.2 lnc-SNX19-9:4