Transcript: lnc-SNX19-9:5

Basic information

LNCipedia transcript ID: lnc-SNX19-9:5 
LNCipedia gene ID: lnc-SNX19-9
Ensembl Gene ID: ENSG00000237654
Ensembl Transcript ID: ENST00000414856
Location (hg38): chr11:131536476-131540598
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414856.1; AP003025.2-003; OTTHUMT00000142055.1; NONHSAT025175
Alternative gene names: ENSG00000237654.1; AP003025.2; OTTHUMG00000066440.1; ENSG00000237654.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.3487 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX19-9:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf39-2:3
4.0 lnc-C11orf39-2:3
4.1 lnc-C11orf39-2:3
5.0 lnc-C11orf39-2:3
5.1 lnc-OPCML-2:5
5.2 lnc-SNX19-9:5