Transcript: lnc-SNX20-1:1

Basic information

LNCipedia transcript ID: lnc-SNX20-1:1 
LNCipedia gene ID: lnc-SNX20-1
Ensembl Gene ID: ENSG00000261644
Ensembl Transcript ID: ENST00000567728
Location (hg38): chr16:50735713-50740716
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1150 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567728.1; RP11-327F22.2-001; OTTHUMT00000422987.1; NONHSAT142435
Alternative gene names: ENSG00000261644.1; RP11-327F22.2; OTTHUMG00000173402.1; ENSG00000261644.2; RP11-327F22.1; AC007728.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -278.9112 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-1:1
4.0 lnc-SNX20-1:1
4.1 lnc-SNX20-1:1
5.0 lnc-SNX20-1:1
5.1 lnc-CFAP20-135:6
5.2 lnc-SNX20-1:1