Transcript: lnc-SNX20-1:3

Basic information

LNCipedia transcript ID: lnc-SNX20-1:3 
LNCipedia gene ID: lnc-SNX20-1
Location (hg38): chr16:50740910-50742815
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 640 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000563315.1; RP11-327F22.1-001; OTTHUMT00000422988.1; NONHSAT142437
Alternative gene names: ENSG00000260929.1; RP11-327F22.1; OTTHUMG00000173403.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.1842 non-coding 
CPAT coding probability 1.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-3:1
4.0 lnc-SNX20-3:1
4.1 lnc-SNX20-1:3
5.0 lnc-SNX20-1:3
5.1 lnc-CFAP20-135:1
5.2 lnc-SNX20-1:3