Transcript: lnc-SNX20-5:2

Basic information

LNCipedia transcript ID: lnc-SNX20-5:2 
LNCipedia gene ID: lnc-SNX20-5
Ensembl Gene ID: ENSG00000260616
Ensembl Transcript ID: ENST00000575917
Location (hg38): chr16:50783859-50798242
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 358 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575917.1; RP11-327F22.4-002; OTTHUMT00000439654.1; NONHSAT142441; ENST00000575917.5
Alternative gene names: ENSG00000260616.2; RP11-327F22.4; OTTHUMG00000173405.2; ENSG00000260616.6; AC007728.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -404.0728 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-5:2
4.0 lnc-SNX20-5:2
4.1 lnc-SNX20-5:2
5.0 lnc-SNX20-5:2
5.1 lnc-CFAP20-134:4
5.2 lnc-SNX20-5:2