Transcript: lnc-SNX20-6:1

Basic information

LNCipedia transcript ID: lnc-SNX20-6:1 
LNCipedia gene ID: lnc-SNX20-6
Ensembl Gene ID: ENSG00000260042
Ensembl Transcript ID: ENST00000569986
Location (hg38): chr16:50856614-50879278
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 981 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569986.1; CTD-2034I21.1-001; OTTHUMT00000422674.1
Alternative gene names: ENSG00000260042.1; CTD-2034I21.1; OTTHUMG00000173281.1; AC025810.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.8647 non-coding 
CPAT coding probability 10.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-6:1
4.0 lnc-SNX20-6:1
4.1 lnc-SNX20-6:1
5.0 lnc-SNX20-6:1
5.1 lnc-CFAP20-133:2
5.2 lnc-SNX20-6:1