Transcript: lnc-SNX20-8:2

Basic information

LNCipedia transcript ID: lnc-SNX20-8:2 
LNCipedia gene ID: lnc-SNX20-8
Location (hg38): chr16:50562981-50636034
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 713 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: l_1322_chr16:50596891-50669903_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.8468 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-8:2
4.0 lnc-SNX20-8:2
4.1 lnc-SNX20-8:2
5.0 lnc-SNX20-8:2
5.1 lnc-CFAP20-137:2
5.2 lnc-SNX20-8:2