Transcript: lnc-SNX20-8:3

Basic information

LNCipedia transcript ID: lnc-SNX20-8:3 
LNCipedia gene ID: lnc-SNX20-8
Ensembl Gene ID: ENSG00000205414
Ensembl Transcript ID: ENST00000379963
Location (hg38): chr16:50606076-50613684
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2469 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000379963.1; RP11-401P9.6-001; OTTHUMT00000422979.1; NONHSAT142416
Alternative gene names: ENSG00000205414.1; RP11-401P9.6; OTTHUMG00000173398.1; AC007608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.2144 non-coding 
CPAT coding probability 17.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-8:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-2:1
4.0 lnc-SNX20-2:1
4.1 lnc-SNX20-8:3
5.0 lnc-SNX20-8:3
5.1 lnc-CFAP20-137:3
5.2 lnc-SNX20-8:3