Transcript: lnc-SNX20-8:6

Basic information

LNCipedia transcript ID: lnc-SNX20-8:6 
LNCipedia gene ID: lnc-SNX20-8
Ensembl Gene ID: ENSG00000260029
Ensembl Transcript ID: ENST00000569940
Location (hg38): chr16:50551824-50553940
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1146 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569940.2; RP11-401P9.1-001; OTTHUMT00000422977.2; NONHSAT142414
Alternative gene names: ENSG00000260029.2; RP11-401P9.1; OTTHUMG00000173396.2; AC007608.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.3476 non-coding 
CPAT coding probability 12.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX20-8:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX20-4:1
4.0 lnc-SNX20-4:1
4.1 lnc-SNX20-8:6
5.0 lnc-SNX20-8:6
5.1 lnc-CFAP20-137:6
5.2 lnc-SNX20-8:6