Transcript: lnc-SNX33-1:1

Basic information

LNCipedia transcript ID: lnc-SNX33-1:1 
LNCipedia gene ID: lnc-SNX33-1
Ensembl Gene ID: ENSG00000260206
Ensembl Transcript ID: ENST00000564683
Location (hg38): chr15:75636139-75639239
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564683.1; CTD-2026K11.2-001; OTTHUMT00000420497.1; NONHSAT047354
Alternative gene names: ENSG00000260206.1; CTD-2026K11.2; OTTHUMG00000172792.1; AC105020.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.7831 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNX33-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX33-1:1
4.0 lnc-SNX33-1:1
4.1 lnc-SNX33-1:1
5.0 lnc-SNX33-1:1
5.1 lnc-ISL2-18:1
5.2 lnc-SNX33-1:1