Transcript: lnc-SOCS5-4:10

Basic information

LNCipedia transcript ID: lnc-SOCS5-4:10 
LNCipedia gene ID: lnc-SOCS5-4
Location (hg38): chr2:46816777-46817313
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 202 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00003669
Alternative gene names: XLOC_001459; linc-TTC7A-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 17.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS5-4:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOCS5-1:3
3.1 lnc-SOCS5-2:3
4.0 lnc-AC016722.2.1-1:11
4.1 lnc-AC016722.2.1-1:11
5.0 lnc-AC016722.2.1-1:11
5.1 lnc-TTC7A-3:10
5.2 lnc-SOCS5-4:10