Transcript: lnc-SOCS6-6:1

Basic information

LNCipedia transcript ID: lnc-SOCS6-6:1 
LNCipedia gene ID: lnc-SOCS6-6
Ensembl Gene ID: ENSG00000260457
Ensembl Transcript ID: ENST00000563639
Location (hg38): chr18:71837039-71870788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563639.2; RP11-723G8.1-001; OTTHUMT00000431627.2; NONHSAT059804
Alternative gene names: ENSG00000260457.2; RP11-723G8.1; OTTHUMG00000176204.2; AC027458.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6356 non-coding 
CPAT coding probability 6.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOCS6-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOCS6-6:1
4.0 lnc-SOCS6-6:1
4.1 lnc-SOCS6-6:1
5.0 lnc-SOCS6-6:1
5.1 lnc-KCNG2-79:1
5.2 lnc-SOCS6-6:1