Transcript: lnc-SOD1-11:2

Basic information

LNCipedia transcript ID: lnc-SOD1-11:2 
LNCipedia gene ID: lnc-SOD1-11
Location (hg38): chr21:31314998-31315820
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 823 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_2518_NR_026845
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.9271 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SOD1-11:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SOD1-11:2
4.0 lnc-SOD1-11:2
4.1 lnc-SOD1-11:2
5.0 lnc-SOD1-11:2
5.1 lnc-OLIG1-30:2
5.2 lnc-SOD1-11:2